Elektron Musical Instruments

I'm trying to integrate the MD with my CubaseSX sequencing rig. I don't have
a preference as to which is the MTC master, but I need to be able to
navigate around and play back sub-sections of songs both for composition and
editing.

Is anyone using the MD in tandem with a software sequencer? How have you got
it setup? Any pointers?

Sorry if this is vague, but I'm at a bit of a loss as to how to rig this up.
I fell in love with the MD, but it's got to get along with the family
eventually... ;P